Newsletter 28 March
Corona Virus Vs Chines Virus: COVID-19
- Overall Status So Far
- In India
- Scientific basis of Problem and Development:
- Controversies over Terminology and WHO
- In India
- Status: Diagnosis Vs Reporting
- Health Facilities and Magnitude of Problems
- Being an Indian
- Govt Policies and Results so far
- Indian Researches and Developments
- Conclusion to Date
Overall Status
Background
On 31st December 2019, WHO was informed of a cluster of cases of pneumonia of unknown cause detected in Wuhan City, Hubei Province of China. The coronavirus disease (COVID-2019) was identified as the causative virus by Chinese authorities on 7 January. As part of WHO’s response to the outbreak, the R&D Blueprint has been activated to accelerate diagnostics, vaccines and therapeutics for this novel coronavirus.
World Status so far
| Total | Active | Closed |
Coronavirus Cases | 945 | 829 | 1115 |
Recovered | 84 | In Mild Condition: 829 (100%) | 84 |
Deaths | 21 | Critical: Nil | 21 |
| Total | Active | Closed |
Coronavirus Cases | 566,318 | Currently Infected Patients: 411532 | Cases with outcome: 154,786 |
Recovered | 129,360 | In Mild Condition: 390,116 (95%) | Recovered 129,360 (84%) |
Deaths | 25,426 | Serious or Critical: 21,416 (5%) | Deaths: 25,426 (16%) |
What India Has done to combats it?
· Jan 28th | · Health Min Dr. Harsh Vardhan told to media that there is nothing to panic, coronavirus has not come to India. We have taken all precautionary measures. All hospitals have been asked to make isolation wards, we have launched a helpline number. · Air India Boeing 747 on standby to evacuate Indians from Wuhan amid coronavirus outbreak. |
· Jan 30th | · 1st positive case of Novel Coronavirus has been found, in Kerala. The student was studying at Wuhan University in China. The patient is stable and is being closely monitored. · However, as per MEA “we do not have any confirmation about any Indian being affected by coronavirus”. · Tamil Nadu: Manufacturers in Madurai working extra hours to produce N95 masks as demand soars in China due to Corona Virus outbreak. · Evacuations: The US, Japan, and several other countries are now flying their citizens out of Wuhan. · Chinese Embassy in India has maintained close communication with Indian Govt, timely briefed on the development of the epidemic and China’s efforts in epidemic prevention and control. |
· Jan 31st | · The WHO has declared the Wuhan coronavirus an international emergency. · Air India special flight to depart today from Delhi for Wuhan (China) for the evacuation of Indians. · Indian Army has created a facility near Manesar, Haryana for quarantine of approximately 300 Indian students who will be arriving from Wuhan, China. · The screening at airport followed by quarantine at Manesar started and if any individual is suspected to be infected, he/she will be shifted to isolation ward at Base Hospital Delhi Cantonment. · ITBP Chhawla Camp, New Delhi developed a facility for quarantine of approximately 600 Indian families arriving from Wuhan, China. |
· Feb 3rd | · Third case of Corona Virus reported in Kerala while second on Feb 2nd · The government announced a temporary suspension of the e-visa facility for Chinese travelers and foreigners residing in the neighboring country and issued a fresh advisory saying anyone with travel history to China since Jan 15 can be quarantined. · The Health Ministry asked people to refrain from travelling to China in view of the coronavirus outbreak and said anyone with a travel history of China since January 15 could be quarantined. |
· Feb 4th | · The 5 individuals who were isolated at the quarantine camp in Manesar, Haryana as they were showing symptoms of cough and cold, have been tested negative for nCV. · 820 Isolation beds have been reserved across state for travelers returning back from China. |
· Feb 5th | · India cancels all valid visas to Chinese, and foreigners who visited China in last two weeks. · Chines ambassador assured “China working hard to ensure safety of Indians in country |
· Feb 7th | · Mumbai port trust: Cruise ships has to provide us complete list of passengers, with details if any of them travelled to China in last 14-15 days. |
· Feb 10th | · India ranks 17th among the list of countries most likely to import cases of the novel coronavirus (2019-nCoV), a global import risk assessment model has found. · The first 3 Indians who tested positive for 2019-nCoV have recovered, · 15 students from Kerala, who were stranded in Hubei in China’s Wuhan, reached Kochi on Fri night onboard an Air Asia flight. · The Govt had screened 176,703 people aboard 1,636 flights from China, Hong Kong, Singapore and Thailand at 21 airports. |
· Feb 13th | · Health Min on COVID-19: All 402 people kept in ITBP quarantine facility have tested negative and their condition is stable. · Up to date: 2,51,447 airport passengers have been screened. Screening also being done at 12 major and 65 minor ports. · Ship Diamond Princess (of Japan) has been quarantined. 2 Indian crew members on board the ship tested positive. The MEA was keeping a close watch on it. · Global epidemic: The virus has killed more than 1,350 people and infected over 60,000 people worldwide. The vast majority of cases are in mainland China. |
· Feb 15th | · Death toll in China reaches 1,523, confirmed cases over 66,000: However, US claimed lack of Transparency |
· Feb 18th | · China and India was keeping close communication on the epidemic. |
· Feb 20th | · NIV, Pune’s expects to be ready with vaccine against novel coronavirus (COVID-19) by early 2022 |
· Feb 27th | · A special flight of Indian Air Force comprising of crew, medical team and support staff arrived at Air Force Station, Palam, New Delhi from Wuhan, China. · Out of the total 138 Indian nationals originally on-board the Diamond Princess, 16 Indian crew members have tested positive for Virus and received necessary medical care and treatment at onshore medical facilities in Japan. |
· Feb 28th | · Chinese doctors and nurses have been putting their lives as risk. And the BBC’s Stephen McDonell says they’re now also key to the government’s “propaganda push”. |
· Mar 2nd | · Two more cases of nCOVID19 reported, one each from New Delhi and Telangana. Both the patients are stable and being closely monitored. · The global death toll from the outbreak crossed 3,000 after dozens more were killed in China and cases soared around the world with a second fatality in the United States. · The deadly virus, has spread to more than 60 countries and infected more than 88,000 people. · “Working out a strategy to bring back Indians from Iran” Health Minister said. · Health Ministry have confirmed that 6 cases with high viral load have been detected during sample testing in Agra. These are the ones who have come in contact with the COVID-19 patient from Delhi. · India restricts exports of 26 pharma formulations and drugs. Exports of certain APIs (Active Pharmaceutical Ingredient) and formulations, including Paracetamol, Vitamin B1 and B12, have been put under restricted category amid the coronavirus outbreak in China, according to a government notification. |
· Mar 3rd | · India suspended Visas/e-Visa of nationals from Italy, Iran, South Korea, and Japan which includes Visa on Arrival for Japan and South Korea due to emerging global scenarios regarding outbreak. · PM Modi tweeted “Had an extensive review regarding preparedness on the COVID-19 Novel Coronavirus. Different ministries and states are working together, from screening people arriving in India to providing prompt medical attention. There is no need to panic” · Indo-Tibetan Border Police: No fresh symptoms of Corona Virus seen in 112 people housed at ITBP quarantine facility in Chhawla; All 112 people had tested negative last Sun. · Govt has issued advisory to all media that they pay due attention on corona virus, its prophylaxis and others related issues. |
· Mar 4th | · Min of Health: a total 29 cases of corona virus reported so far in India, out which 3 earlier cases in Kerala have been cured properly. So 25 remain positive. He also informed that 39 labs have facility to testing the Corona Virus. Another case in Jaipur, wife of the already confirmed Italian patient, has been confirmed for COVID-19. · In addition, two cases with high viral load have been detected in Telangana. · 14 out of 21 Italian nationals have found positive for coronavirus. They have been sent to at ITBP quarantine facility in Chhawla. · All flights and passengers will be part of universal screening, not just the 12 countries which we had listed earlier. 589 K people have been screened so far. · MHFW: If Iran Govt supports our efforts, then we have an intention to establish a test lab there as well. This will let us bring back our citizens from Iran after a thorough screening. Cabinet Secretary held a review meeting through video conference in Delhi today, with the Secretaries of concerned Ministries, Chief Secretaries and Health Secretaries of the States to review and assess action taken for containment of COVID19. |
· Mar 5th | · Number of positive cases in India rises to 30 after a person in Ghaziabad, Uttar Pradesh tests positive · EAM Update for Indians stranded in Iran and for their families- Our medical team for screening arrived in Iran. Expressed hope to establish first clinic at Qom by evening. Screening process will start immediately. Working on logistics of return with Iranian authorities. Over 1,200 Indian nationals stuck in Iran. · Govt Issued Advisory: Those traveling to India from/having visited Italy or Republic of Korea will need certificate of having tested negative for COVID-19 from designated laboratories authorized by the health authorities of these countries. This will be enforced from Mar 10. · Health Minister: As on 4th Mar, a total of 28529 persons were brought under community surveillance and are being monitored. |
· Mar 6th | · Govt was on High Alert · Health Ministry: One more COVID19 case in Delhi (resident of Uttam Nagar) has been confirmed, taking the total number of positive cases in the country to 31. The patient has a travel history from Thailand and Malaysia. · Airlines globally are set to lose in passenger revenues of up to $113 billion, if the Corona Virus spreads further, the International Air Transport Association (IATA) has said. · Indian Army: In consonance with various advisories issued by the Govt, Indian Army HQ has issued detailed instructions with respect to preparations & emergency response in tackling the COVID-19 virus. · University Grants Commissions (UGC) issues advisory to universities on Coronavirus; says, “Avoid large gathering on campus, any student/staff with travel history to COVID-19 affected countries or in contact with an infected person in last 28 days should be home quarantined for 14 days. · Civil Aviation Minister announced that the first flight from Iran is expected to land in the country late on March 6 and would bring around 300 swabs of Indians for testing. |
· Mar 9th | · Total positive cases rises to 43, while cases worldwide crosses 110,000, reports AFP · Health Minister in House: On 18 Jan we started universal screening on 7 airports and now 30 airports have been put under screening. All passengers coming from other countries are being screened on the airports. So far, 874708 passengers screened. We have discussed with Delhi Govt to prepare for isolation wards, quarantine facilities, availability of doctors, contact tracing and other precautions, if the cases increase. · PM Modi, who was expected to visit Dhaka next week, has cancelled his trip amid a surging threat of coronavirus in South Asia. · A total of 17 Indian passengers, all from Tamil Nadu, are stranded in a cruise ship that is docked in the Nile near Luxor city in Egypt since Thury after 12 crew members and 33 passengers tested positive for Covid-19 |
· | · 65 cases, One Death · India suspended all existing visas, except diplomatic, official, UN/International Orgs, employment, project visas till 15 Apr 2020. This will come into effect from 1200GMT on 13 Mar 2020. Indian nationals are strongly advised to avoid all non-essential travel abroad o All existing visas, except diplomatic, official, UN/International Organizations, employment, project visas, stand suspended till 15th April 2020. This has come into effect from 1200 GMT on 13th Mar 2020 at the port of departure. Visa free travel facility granted to OCI card holders is kept in abeyance till April 15th 2020. This has come into effect from 1200 GMT on 13th Mar 2020 at the port of departure. o Any foreign national who intends to travel to India for compelling reason may contact the nearest Indian Mission. o All incoming travelers, including Indians, who were arriving from or having visited China, Italy, Iran, Republic of Korea, France, Spain & Germany after 15th Feb, 2020 shall be quarantined for a minimum period of 14 days. The above has come into effect from 1200 GMT on 13th Mar 2020 at the port of departure. o Incoming travelers, including Indian nationals, are advised to avoid non-essential travel and are informed that they can be quarantined for a min of 14 days on their arrival in India. o Indian nationals were strongly advised to avoid all non-essential travel abroad. On their return, they could be subjected to quarantine for a min of 14 days. o International traffic through land borders will be restricted to designated check posts with robust screening facilities. These will be notified separately by MHA. o Provision for testing primarily for students/ compassionate cases in Italy to be made and collection for samples to be organized accordingly. Those tested negative will be allowed to travel and will be quarantined on arrival in India for 14 days. · 15 laboratories started for coronavirus tests: Health Minister · ICMR: We have managed to isolate the coronavirus, we have 11 such isolates. Vaccines will take a minimum of 1.5 to 2 years. · A total 57 Indian and 17 others found positive |
· Mar 13th | · PM Modi Proposed the SAARC Countries offered to work together against Corona Virus, which is welcomed by all national heads. · 81 confirmed cases in India, out of which 64 are Indians, 16 Italians and 1 Canadian · Health Ministry: Govt has brought 42,296 passengers under community surveillance, out of which 2,559 were symptomatic and 522 hospitalized including 17 foreign nationals. · Indo-Bangladesh cross border passenger trains and buses to remain suspended till Apr 15. The movement of people and commodities from Pakistan at the joint check post (JCP) at Attari near Amritsar in Punjab was suspended indefinitely on Fri as a precautionary measure against COVID-19. · MEA: 2nd batch of 44 Indian pilgrims has arrived today from Iran. And assured house to continued our efforts to bring back the others continue · 46 people placed under quarantine in Kalaburagi after Covid-19 claims man’s life · At the Indian Army’s Manesar quarantine facility, one male individual who had returned from Italy on Mar 11th has been tested positive. · Air India cancels flights to Italy, France, Germany, Spain, South Korea and Sri Lanka till Apr 30th. · The Indian rupee dropped to a record low on Fri, weighed down by worries over the COVID-19 pandemic that has prompted investors to dump riskier assets and move towards safe havens. · All schools and colleges and higher education’s Institutes closed in most part of India · Delhi Lt Governor Issued ‘Delhi Epidemic Diseases, COVID-19 Regulations, 2020’ |
· Mar 14th | · MHFW: Total number of positive Coronavirus cases in India is 83 causalities reached 2 · More than 4000 people who had come in contact with 84 positive cases are under surveillance: Health Ministry |
· Mar 16th | · TOTAL DEATH Globally- COVID-19 -6069 · TOTAL CASES- 160980 · TOTAL EVACUATED IN THE COUNTRY SO FAR -1453 · PM held Video Conferencing to SAARC countries which participated by all countries heads except Pak. · Railways started thermal screening of passengers in running train. · 3 people of the 236 who were evacuated from Iran on Sunday were checked for coronavirus and tested negative, officials say. · Fourth batch of 53 Indians return to India from Iran, taking the total number of people evacuated from the coronavirus-hit country to 389. · 287 Indians from Coronavirus-hit Iran arrive in India · The 218 Indians who landed from Milan, Italy at Delhi airport today have been shifted to Indo-Tibetan Border Police’s Chhawla camp around 1200 hrs on Sun. · 20 passengers, including UK national who tested positive, of Dubai-bound flight from Kochi detained; Flight leaves with others. Airport official · RBI Governor Addressed to Media regarding Financial Crisis amid COVID-19: A quick response team may be constituted for COVID-19 monitoring. India is not immune to this pandemic, already more than 100 cases have been reported. Effort are being mounted by the Govt on war-footing. As far as Indian economy is concerned, India is relatively insulated from global value chain, to that extent impact on India will be less. But India is integrated to global economy so there’ll be some impact. We’re evaluating and we’ll announce it when we hold Policy meeting. |
· Mar 17th | · Total number of confirmed cases across India reaches 137: Health Ministry · Central Railway today cancelled 23 trains to contain the effects of coronavirus and non-occupancy of trains. · DG of ICMR: ICMR is also engaging with high-quality private laboratories that include NABL accredited laboratories, to understand the modalities to increase access to the tests while ensuring appropriate safeguards. Currently the laboratory expansion of ICMR is engaged, we are expanding our number of laboratories and as we speak, today we have 72 functional laboratories in ICMR system. 72 ICMR labs and 49 others in government sector to be functional by the end of the week, also engaging with NABL accredited labs. · India bans entry of passengers from Afghanistan, Philippines, and Malaysia with immediate effect. · Henk Bekedam, WHO Representative to India on meeting with ICMR: We have very good research capacity in India and especially at ICMR & Dept of health research. They have been able to isolate the virus, now India will continue to be part of the research community. · A 64-year-old COVID-19 patient passed away · ICMR and MHFW has laid guidelines for testing strategy in India. |
· Mar 18th | · Indian carried may ground 150 planes; stare at quarterly loss on coronavirus impact: Report · Indian Railways cancelled 85 trains. · West Bengal reports first positive case of coronavirus · Cyber cops stepped up vigil against rumor-mongers · All manufacturers/importers are directed to furnish info on surgical masks, gloves & sanitizers |
· Mar 19th | · Indians resolute against coronavirus: PM Modi Addressed to Nation o I need your coming few weeks and your time. Till now, science has not been able to find a solution for the coronavirus pandemic and no vaccine has been invented for it. It is natural to get worried about such a situation. o He urged the countrymen to show their gratitude to People who are working in medical sectors and other emergencies services on Sun at 5 pm for 5 mins o I request all countrymen to leave their homes only if it is essential. You should work from whether related to business or office. o Asked to keep countrymen at home only on Sun from 7 am to 9 pm, called “Janta Curfew” · Health ministry issues SOP for international passenger movement at Delhi airport · 43 Indians who arrived last night through Attari-Wagah Border have been sent to quarantine facility in Amritsar. · 6 passengers who returned from Singapore recently and have ‘home quarantine stamp’ on their hands, were deboaorded from Saurashtra Express at Borivali Railway Station. · The quarantine facilities with a combined capacity of 59,587 beds have been set up across India, including 11,934 beds at central Govt facilities, 26,153 beds at state government’s facilities and 21,500 beds at Haj facilities: Union Health Ministry. · 826 Random samples tested, none of them are positive so far: Indian Council of Medical Research (ICMR) on random samples tested so far to rule out community transmission of COVID-19 (ANI) · PM Modi has chaired a high-level meeting to review the ongoing efforts to contain COVID-19. He emphasized on actively engaging with individuals, local communities and organizations in chalking out mechanisms to fight the COVID-19. · No scheduled international commercial passenger flights shall be allowed to land in India from March 22 for one week. · State governments are being requested to enforce work for home for private sector employees except those working in emergency/essential services. · All children below 10 should be advised to stay at home and not to venture out. Railways and civil aviation shall suspend all concessional travel except for students, patients and divyang category. |
· Mar 20th | · Indian Council of Medical Research: A total of 206 individuals have been confirmed positive among suspected cases and contacts of known positive cases. A total of 14,376 samples from 13,486 individuals have tested for COVID19 as on 20th March, 10am. · 18 companies, including International and Indian companies, have got the test license from Drug Controller General of India (DGCI) to do COVID19 diagnostic tests in the country. · All International Flights cancelled at any airport in India. |
- However, certain media houses in India and abroad questioned the comparatively less number testing facilities in India which so far only around 35K tests have been conducted so far, which is nothing for a most dense populated country like India. However, 2 points are to be noted here:
- Tests have conducted to the persons who are symptomatic to Corona and results is around 2.8%.
- No reports of mass causality reported in the country.
- Therefore, by this calculation, claim of India seems to be logical that third stage is yet to reach. Nevertheless, it’s not started so far claimed is also wrong, as persons who came in contact of externally visited persons, but due to lockdown, of course of containment is proceeding slowly.
- Operational Laboratories for COVID19 Testing: N= 113 (Govt.) +47 (private) =160 which have been tested 34,931 tests conducted till date. Capacity utilization in the ICMR network is around 30%.
Scientific basis of Problem and Development:
Basics of Virus
The family Coronaviridae includes a large number of viruses that in nature are found in birds and mammals. Human coronaviruses, first characterized in the 1960s, are associated with a large percentage of respiratory infections both in children and adults.
Virus is enveloped, spherical, about 120 nm in diameter. The RNA genome is associated with the N protein to form the helical nucleocapsid for the genus coronavirus. Monopartite, linear ssRNA (+) genome of 27-32kb in size, the largest of all RNA virus genomes. Capped, and polyadenylated. The leader RNA (65-89 bp) at the 5′ end of the genome is also present at the end of each sub-genomic RNAs.
The virion RNA is infectious and serves as both the genome and viral messenger RNA. Genomic RNA encodes for ORF1a, as for ORF1b, it is translated by ribosomal frameshifting. Resulting proteins pp1a and pp1ab are processed into the viral polymerase (RdRp) and other non-structural proteins involved in RNA synthesis. Structural proteins are expressed as subgenomic RNAs. Each RNA (genomic and subgenomic) is translated to yield only the protein encoded by the 5′-most ORF.
Pathogenesis of COVID-19 [1]
Patients with COVID-19 show clinical manifestations including fever, nonproductive cough, dyspnea, myalgia, fatigue, normal or decreased leukocyte counts, and radiographic evidence of pneumonia [15], which are similar to the symptoms of SARS-CoV and MERS-CoV infections.
Coronavirus entry and Replication
- Coronavirus S protein has been reported as a significant determinant of virus entry into host cells.
- The envelope spike glycoprotein binds to its cellular receptor, ACE2 for SARS-CoV and SARS-CoV-2
- CD209L (a C-type lectin, also called L-SIGN) for SARS-CoV, DPP4 for MERS-CoV. The entry of SARS-CoV into cells was initially identified to be accomplished by direct membrane fusion between the virus and plasma membrane.
- A critical proteolytic cleavage event occurred at SARS-CoV S protein at position (S2′) mediated the membrane fusion and viral infectivity.
- MERS-CoV also has evolved an abnormal two-step furin activation for membrane fusion
- Besides membrane fusion, the clathrin-dependent and -independent endocytosis mediated SARS-CoV entry too.
- After the virus enters the cells, the viral RNA genome is released into the cytoplasm and is translated into two polyproteins and structural proteins, after which the viral genome begins to replicate.
- The newly formed envelope glycoproteins are inserted into the membrane of the endoplasmic reticulum or Golgi, and the nucleocapsid is formed by the combination of genomic RNA and nucleocapsid protein.
- Then, viral particles germinate into the endoplasmic reticulum-Golgi intermediate compartment (ERGIC).
- At last, the vesicles containing the virus particles then fuse with the plasma membrane to release the virus.
Antigen presentation in coronavirus infection
- While the virus enters the cells, its antigen will be presented to the antigen presentation cells (APC), which is a central part of the body’s anti-viral immunity. Antigenic peptides are presented by MHC and then recognized by virus-specific cytotoxic T lymphocytes (CTLs).
- Hence, the understanding of antigen presentation of SARS-CoV-2 will help our comprehension of COVID-19 pathogenesis.
- The antigen presentation of SARS-CoV mainly depends on MHC I molecules, but MHC II also contributes to its presentation.
- The numerous HLA polymorphisms correlate to the susceptibility of SARS-CoV, such as HLA-B∗4601, HLA-B∗0703, HLA-DR B1∗1202 and HLA-Cw∗0801, whereas the HLA-DR0301, HLA-Cw1502 and HLA-A∗0201 alleles are related to the protection from SARS infection.
- In MERS-CoV infection, MHC II molecules, such as HLA-DRB1∗11:01 and HLA-DQB1∗02:0, are associated with the susceptibility to MERS-CoV infection.
- Besides, gene polymorphisms of MBL (mannose-binding lectin) associated with antigen presentation are related to the risk of SARS-CoV infection.
- These researches will provide valuable clues for the prevention, treatment, and mechanism of COVID-19.
Humoral and Cellular immunity
- Antigen presentation subsequently stimulates the body’s humoral and cellular immunity, which are mediated by virus-specific B and T cells.
- Similar to common acute viral infections, the antibody profile against SARS-CoV virus has a typical pattern of IgM and IgG production.
- The SARS-specific IgM antibodies disappear at the end of week 12, while the IgG antibody can last for a long time, which indicates IgG antibody may mainly play a protective role while the SARS-specific IgG antibodies primarily are S-specific and N-specific antibodies.
- Comparing to humoral responses, there are more researches on the cellular immunity of coronavirus.
- The latest report shows the number of CD4+and CD8+ T cells in the peripheral blood of SARS-CoV-2-infected patients significantly is reduced, whereas its status is excessive activation, as evidenced by high proportions of HLA-DR (CD4 3.47%) and CD38 (CD8 39.4%) double-positive fractions.
- Similarly, the acute phase response in patients with SARS-CoV is associated with severe decrease of CD4+T and CD8+ T cells.
- Even if there is no antigen, CD4+and CD8+ memory T cells can persist for four years in a part of SARS-CoV recovered individuals and can perform T cell proliferation, DTH response and production of IFN-γ.
- Six years after SARS-CoV infection, specific T-cell memory responses to the SARS-CoV S peptide library could still be identified in 14 of 23 recovered SARS patients.
- The specific CD8+T cells also show a similar effect on MERS-CoV clearance in mice.
- These findings may provide valuable information for the rational design of vaccines against SARS-CoV-2.
Cytokine storm in COVID-19
- The report in Lancetshows ARDS is the main death cause of COVID-19.
- Of the 41 SARS-CoV-2-infected patients admitted in the early stages of the outbreak, six died from ARDS.
- ARDS is the common immunopathological event for SARS-CoV-2, SARS-CoV and MERS-CoV infections.
- One of the main mechanisms for ARDS is the cytokine storm, the deadly uncontrolled systemic inflammatory response resulting from the release of large amounts of pro-inflammatory cytokines (IFN-α, IFN-γ, IL-1β, IL-6, IL-12, IL-18, IL-33, TNF-α, TGFβ, etc.) and chemokines (CCL2, CCL3, CCL5, CXCL8, CXCL9, CXCL10, etc.) by immune effector cells in SARS-CoV infection.
- Similar to those with SARS-CoV, individuals with severe MERS-CoV infection show elevated levels of IL-6, IFN-α, and CCL5, CXCL8, CXCL-10 in serum compared to those with the mild-moderate disease.
- The cytokine storm will trigger a violent attack by the immune system to the body, cause ARDS and multiple organ failure, and finally lead to death in severe cases of SARS-CoV-2 infection, just like what occurs in SARS-CoV and MERS-CoV infection.
Coronavirus immune evasion
- To better survive in host cells, SARS-CoV and MERS-CoV use multiple strategies to avoid immune responses.
- The evolutionarily conserved microbial structures called pathogen-associated molecular patterns (PAMPs) can be recognized by pattern recognition receptors (PRRs).
- IFN-I (IFN-α and IFN-β) has a protective effect on SARS-CoV and MERS-CoV infection, but the IFN-I pathway is inhibited in infected mice.
- Accessory protein 4a of MERS-CoV may block the induction of IFN at the level of MDA5 activation through direct interaction with double-stranded RNA.
- Besides, ORF4a, ORF4b, ORF5, and membrane proteins of MERS-CoV inhibit nuclear transport of IFN regulatory factor 3 (IRF3) and activation of IFN β promoter.
- The antigen presentation can also be affected by the coronavirus. For example, gene expression related to antigen presentation is down-regulated after MERS-CoV infection.
- Therefore, destroying the immune evasion of SARS-CoV-2 is imperative in its treatment and specific drug development.
The analysis done by Paraskevis et al (2020), suggests that the 2019-nCoV although closely related to BatCoV RaTG13 sequence throughout the genome (sequence similarity 96.3%), shows discordant clustering with the Bat_SARS-like coronavirus sequences.
Specifically, in the 5′-part spanning the first 11,498 nucleotides and the last 3′-part spanning 24,341–30,696 positions, 2019-nCoV and RaTG13 formed a single cluster with Bat_SARS-like coronavirus sequences, whereas in the middle region spanning the 3′-end of ORF1a, the ORF1b and almost half of the spike regions, 2019-nCoV and RaTG13 grouped in a separate distant lineage within the sarbecovirus branch.
The levels of genetic similarity between the 2019-nCoV and RaTG13 suggest that the latter does not provide the exact variant that caused the outbreak in humans, but the hypothesis that 2019-nCoV has originated from bats is very likely. They showed the evidence that the novel coronavirus (2019-nCov) is not-mosaic consisting in almost half of its genome of a distinct lineage within the betacoronavirus. These genomic features and their potential association with virus characteristics and virulence in humans need further attention.
Full-genome sequence analysis of 2019-nCoV revealed that belongs to betacoronavirus, but it is divergent from SARS-CoV and MERS-CoV that caused epidemics in the past. The 2019-nCoV along with the Bat_SARS-like coronavirus forms a distinct lineage within the subgenus of the sarbecovirus (Zhu et al., 2020).
Previous studies have shown that SARS-CoV mutated over the 2002–2004 epidemic to better bind to its cellular receptor and replication in human cells, enhancing virulence. Notably, ACE2, the receptor protein of both SARS-CoV and 2019-nCoV, is abundantly present in humans in the epithelia of the lung and small intestine (Hamming, et al. 2004).
Treatment Prospective
As of now, success in treatment of any Antiviral is drug not proven successful, because of its high mutation capabilities. Most of cases, we have to depend on body’s immunity. And therefore, the famous quote in medical science, “Prophylaxis is better than its Cure” has now changed to “Prophylaxis is its only Cure” need to be underline.
However, as per protocol of treatment, few drugs have come in to light. Due to the lack of efficient and specific treatments and the need to contain the epidemic, drug repurposing appears to be the best tool to find therapeutic solution.
Key Proteins and Their Roles during the Viral Infection Process
However, as per protocol of treatment, few drugs have come in to light. Due to the lack of efficient and specific treatments and the need to contain the epidemic, drug repurposing appears to be the best tool to find therapeutic solution.
Key Proteins and Their Roles during the Viral Infection Process
Target candidate | Full Name | Role during Viral Infection | Possible Drug |
3CLpro | Corona virus main Protease 3CLpro | Protease needed to lysis of viral polyprotein in to functional units | Lopinavir |
PLpro | Pepsin like protease | Protease needed to lysis of viral polyprotein in to functional units | Lopinavir |
RdRp | RNA dependent RNA Polymerase | To replicate viral genome | Remdesvir, Ribavirin |
S Protein | Viral Spike Glycoprotein | Viral surface protein for binding to host cell receptor | Arbidol |
TEMPRSS2 | Trans membrane protease, serine 2 | A protease produced by host cells which primes S Protein to facilitate its binding to ACE2 | Camostat mesylate |
ACE2 | Angiotensin-converting enzyme 2 | A viral receptor protein on host cell which binds viral S protein. | Arbidol* |
AT2 | Angiotensin AT2 receptor | An important effector involved in regulation of hypertension and volume of blood of Cardiovascular system | L-163491 |
*An inhibitor of viral entry in to host cell. Its action on S protein and ACE2 is yet to confirmed |
Chloroquine Remdesivir, Lopinavir Ribavirin or Ritonavir, Galidesivir [2R,3S,5R)-5-(4-amino-5H-pyrrolo[3,2-d]pyrimidin- 7-yl)-3-hydroxy-2-pyrrolidinemethanol], favipiravir have shown efficacy to inhibit coronavirus in vitro. More than 500 patents that disclose the use of four biologics classes such as therapeutic antibodies, cytokines, RNA therapies, and vaccines to treat and prevent SARS and MERS have been analyzed for this study.
An additional 38 patents contained information pertaining to other types of antiviral antibodies that were useful for SARS and MERS therapies.
These included
- Neutralizing antibodies or antibodies designed to target proteins such as IL-6/IL-6R, TLR3 (Toll-like receptor 3), CD16,
- ITAM (immunoreceptor tyrosine-based activation motif),
- DC-SIGN (dendritic cell-specific intercellular adhesion molecule-grabbing non-integrin),
- ICAM-3 (intercellular adhesion molecule 3),
- IP-10/ CXCL10 (interferon γ-inducible protein 10).
Cytokine storm has been reported to correlate with disease severity in SARSCoV-2 infection. Patients admitted to an ICU had higher concentrations of proinflammatory cytokines and chemokines, particularly G-CSF, IP-10/CXCL10, MCP1 (monocyte chemoattractant protein 1), and TNFα, as well as elevated cytokines from T helper 2 cells such as IL-4 and IL-10.
Pathophysiology and virulence mechanisms of CoVs, and SARS-CoV-2 have links to the function of the nsps and structural proteins. For instance, research underlined that multi-domain non-structural protein 3 (Nsp3), a 200 KD protein is able to block the host innate immune response. Among functions of structural proteins, the envelope has a crucial role in virus pathogenicity as it promotes viral assembly and release (Cascella, et al 2020). However, 8 domains of Nsp3 exist in all known CoVs:
- The ubiquitin-like domain 1 (Ubl1),
- the Glu-rich acidic domain (also called “hypervariable region”),
- a macrodomain (also named “X domain”),
- the ubiquitin-like domain 2 (Ubl2),
- the papain-like protease 2 (PL2pro),
- the Nsp3 ectodomain (3Ecto, also called “zinc-finger domain”),
- Y1
- CoV-Y (unknown functions).
In addition, the two transmembrane regions, TM1 and TM2, exist in all CoVs. The three-dimensional structures of domains in the N-terminal two thirds of Nsp3 have been investigated by X-ray crystallography and/or nuclear magnetic resonance (NMR) spectroscopy since the outbreaks of SARS-CoV in 2003 as well as MERS-CoV in 2012 (Lei et. al 2018)
Researchers had proposed some 20 years ago to systematically test chloroquine in viral infections because it had been shown to be effective in vitro against a broad range of viruses. This drug has multiple activities, one of which is to alkalize the phagolysosome, which hampers the low-pH-dependent steps of viral
replication, including fusion and uncoating. Other mechanisms of antiviral activity are poorly explained (Baron et. al. 2020; Colson et.al 2020). Teicoplanin, an antibiotic used to treat staphylococci infection, previously showed efficacy to inhibit the first stage of MERS-coronarivus viral cycle in human cells. This activity is conserved on the SARS-Cov-2, thus placing teicoplanin as a potential treatment for patients with this virus.
It highlights antiviral strategies involving small molecules and biologics targeting complex molecular interactions involved in coronavirus infection and replication. The drug-repurposing effort documented herein focuses primarily on agents known to be effective against other RNA viruses including SARS-CoV and MERS-CoV. The patent analysis of coronavirus-related biologics includes therapeutic antibodies, cytokines, and nucleic acid-based therapies targeting virus gene expression as well as various types of vaccines. More than 500 patents disclose methodologies of these four biologics with the potential for treating and preventing coronavirus infections, which may be applicable to COVID-19. The information included in this report provides a strong intellectual groundwork for the ongoing development of therapeutic agents and vaccines.
Global research and innovation forum: towards a research roadmap
On 30 Jan 2020, following the recommendations of the Emergency Committee, the WHO Director-General declared that the outbreak constitutes a Public Health Emergency of International Concern (PHEIC).
World scientists on COVID-19 met at the World Health Organization’s Geneva headquarters from 11 to 12 Feb 2020 to assess the current level of knowledge about the new virus, agree on critical research questions that need to be answered urgently, and
ways to work together to accelerate and fund priority research that can contribute to curtail this outbreak and prepare for future outbreaks.
WHO – Eight immediate research actions were agreed as part of this Forum [2]
- Mobilize research on rapid point of care diagnostics for use at the community level – this is critical to be able to quickly identify sick people, treat them and better estimate how widely the virus has spread.
- Immediately assess available data to learn what standard of care approaches from China and elsewhere are the most effective – there is an imperative to optimize standard of care given to patients at different stages of the disease and take advantages of all available technological innovations to improve survival and recovery.
- Evaluate as fast as possible the effect of adjunctive and supportive therapies. The global research community need to understand what other adjunctive treatments than currently being used we currently have at our disposal that may help with the standard of care provided to patients, including the quick evaluation of interventions such as steroids and high flow oxygen.
- Optimize use of protective equipment and other infection prevention and control measures in health care and community settings – It is critical to protect health care workers and the community from transmission and create a safe working environment.
- Review all evidence available to identify animal host(s), to prevent continued spill over and to better understand the virus transmissibility in different contexts over time, the severity of disease and who is more susceptible to infection- Understanding transmission dynamics would help us appreciate the full spectrum of the disease, in terms of at risk groups, and conditions that make the disease more severe as well as the effectiveness of certain public health interventions.
- Accelerate the evaluation of investigational therapeutics and vaccines by using “Master Protocols”- Rapidly developing master protocols for clinical trials will accelerate the potential to assess what works and what does not, improve collaboration and comparison across different studies, streamline ethics review and optimize the evaluation of new investigational drugs, vaccines and diagnostics.
- Maintain a high degree of communication and interaction among funders so that critical research is implemented – Funders reiterated their current financial commitments to tackling this outbreak and agreed that the priorities agreed at the Forum would help to coordinate existing investments and inform mobilization of additional resources in the coming days, weeks and months.
- Broadly and rapidly share virus materials, clinical samples and data for immediate public health purposes–It was agreed that virus materials, clinical samples and associated data should be rapidly shared for immediate public health purposes and that fair and equitable access to any medical products or innovations that are developed using the materials must be part of such sharing.
Controversies over the Terminology
”Coronavirus may have origins in China’s biological warfare lab in Wuhan”
- Lethal animal virus epidemic coronavirus, which has sent panic waves across the world, may have its origins at the epicenter of the epidemic, Wuhan, in a laboratory which has been linked to China’s covert biological weapons program.
- The Washington Times reported the link with China’s biological weapons quoting Dany Shoham, a former Israeli military intelligence officer, expert in bioweapons and who has studied Chinese bio warfare. The biosafety lab is located about 20 miles from the Hunan Seaford Market that reports from China say may have been origin point of the virus.
- According to the report, Radio Free Asia this week rebroadcast a local Wuhan television report from 2015 showing China’s most advanced virus research laboratory known as the Wuhan Institute of Virology.
- The laboratory is the only declared site in China capable of working with deadly viruses.
- “Certain laboratories in the institute have probably been engaged, in terms of research and development, in Chinese (biological weapons), at least collaterally, yet not as a principal facility of the Chinese BW alignment,” Shoham told The Washington Times.
- However, he didn’t confirmed but didn’t refused possibilities. Asked if the new coronavirus may have leaked, he said: “In principle, outward virus infiltration might take place either as leakage or as an indoor unnoticed infection of a person that normally went out of the concerned facility. This could have been the case with the Wuhan Institute of Virology, but so far there isn’t evidence or indication for such incident.”
- He also added, that suspicions were raised about the institute when a group of Chinese virologists working in Canada improperly sent samples to China of what he said were some of the deadliest viruses on earth, including the Ebola virus.
- The Wuhan virology institute is under the Chinese Academy of Sciences. But certain laboratories within it “have linkage with the PLA or BW-related elements within the Chinese defense establishment,” he said.
- Rutgers University microbiologist Richard Ebright told London”s Daily Mail that “at this point there’s no reason to harbor suspicions” that the lab may be linked to the virus outbreak.
- In 1993, China declared a second facility, the Wuhan Institute of Biological Products, as one of eight biological warfare research facilities covered by the Biological Weapons Convention (BWC) which China joined in 1985.
- China in the past has denied having any offensive biological weapons. The State Department, in a report last year, said it suspects that China has engaged in covert biological warfare work and its origin yet not known.
- Later, Chinese Foreign Min. later claimed that some Americans working in Wuhan, were first found infected. This came after tweet of US President Trump who termed it as “Chines Virus’.
- While, Gao Fu, Director of Chinese Center for Disease Control and Prevention, told state-controlled media that initial signs as of Thursday indicated that the virus originated from wild animals sold at a seafood market in Wuhan.
- As per the Washington Times, one ominous sign, said a US official, is that false rumors since the outbreak began several weeks ago are being circulated on the Chinese internet claiming the virus is part of a US conspiracy to spread germ weapons.
- That could indicate that China is preparing propaganda outlets to counter future charges the new virus escaped from one of Wuhan’s civilian or defense research laboratories.
- The WHO is calling the microbe novel coronavirus 2019-nCoV. At a meeting in Geneva on Jan 23rd, the organization stopped short of declaring a Public Health Emergency of International Concern.
- The virus outbreak causes pneumonia-like symptoms and prompted China to deploy military forces to Wuhan this week in a bid to halt the spread. All travel out of the city of 11 million people was halted.
- The Wuhan site has studied coronaviruses in the past, including the strain that causes Severe Acute Respiratory Syndrome, (SARS), H5N1 influenza virus, Japanese encephalitis, and dengue. Researchers at the institute also studied the germ that causes anthrax- a biological agent once developed in Russia.
- “The US has compliance concerns with respect to Chinese military medical institutions” toxin research and development because of the potential dual-use applications and their potential as a biological threat,” the report added.
- The recent outbreak of a new and potentially deadly coronavirus in China has, unsurprisingly, kicked off a deluge of misinformation and conspiracy theories. – Foreign Policy
- The Toronto Sun columnist Candice Malcolm pumped the theory on her YouTube show, asking: “Why isn’t the mainstream media talking about the origins of this deadly virus? Could it be linked to China’s biological warfare program?”
- GreatGameIndia, a small conspiracy website (?)—which, among other things, has reported that British intelligence was responsible for the downing of Malaysia Airlines Flight 17 over Ukraine in 2014—began publishing reports last week claiming that Canadian researchers had sold this strain of coronavirus to China.
- The website pointed blame at Xiangguo Qiu, a former researcher with the National Microbiology Laboratory in Winnipeg, Manitoba, a government-run lab that has pioneered vaccines and treatments for various infectious diseases, including Ebola. While it’s true she was escorted from the lab last year by the Royal Canadian Mounted Police, there does not appear to be a national security element to the incident. Charges have not been laid, and those familiar with the case say it is likely a matter of paperwork and protocol. Qiu, in fact, worked extensively with labs in China to create treatments for deadly and infectious diseases.
- Inevitably there is an Israeli story that just might shed some light on what has been going on in China. Scientists at Israel’s Galilee Research Institute are now claiming that they will have a vaccine against coronavirus in a few weeks which will be ready for distribution and use within 90 days.
- The institute is claiming that it has been engaged in 4 years of research on avian coronavirus funded by Israel’s Ministries of Science & Technology and Agriculture.
- They are claiming that the virus is similar to the version that has infected humans, which has led to breakthroughs in development through genetic manipulation, but some scientists are skeptical that a new vaccine could be produced so quickly to prevent a virus that existed only recently.
- They also have warned that even if a vaccine is developed it would normally have to be tested for side effects, a process that normally takes over a year and includes using it on infected humans.
- If one even considers it possible that the US had a hand in creating the coronavirus at what remains of its once extensive biological weapons research center in Ft Detrick Maryland, it is very likely that Israel was a partner in the project.
- Helping to develop the virus would also explain how Israeli scientists have been able to claim success at creating a vaccine so quickly, possibly because the virus and a treatment for it were developed simultaneously.
- The US President Trump is already being blamed for lying about the virus and there are various scenarios in mainstream publications speculating over the possible impact on the election in 2020.
- If the economy sinks together with the stock market, it will reflect badly on Trump whether or not he is actually at fault.
- If containment and treatment of the disease itself in the US does not go well, there could also be a considerable backlash, particularly as the Democrats have been promoting improving health care, which seems somewhat right.
- One pundit argues, however, that disease and a sinking economy will not matter as long as there is a turnaround before the election, but a lot can happen in the next eight months.
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